Click here for a complete list of publications.

Key recent papers:


Babak T, DeVeale B, Tsang EK, Zhou Y, Li X, et al. (2015) Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse. Nat Genet 47: 544-549. PDF


DeVeale B, van der Kooy D, Babak T (2012) Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective. PLoS Genet 8: e1002600. PDF


Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Babak T (2012) A quantitative atlas of polyadenylation in five mammals. Genome Res 22: 1173-1183. PDF


Babak T (2012) Identification of imprinted loci by transcriptome sequencing. Methods Mol Biol 925: 79-88. PDF


Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, et al. (2010) Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation. BMC Genomics 11: 473. PDF


Armour CD, Castle JC, Chen R, Babak T, Loerch P, et al. (2009) Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat Methods 6: 647-649. PDF


Babak T*, Deveale B*, Armour C, Raymond C, Cleary MA, et al. (2008) Global survey of genomic imprinting by transcriptome sequencing. Curr Biol 18: 1735-1741. PDF


Huang JC*, Babak T*, Corson TW, Chua G, Khan S, et al. (2007) Using expression profiling data to identify human microRNA targets. Nat Methods 4: 1045-1049. PDF


Babak T, Blencowe BJ, Hughes TR (2007) Considerations in the identification of functional RNA structural elements in genomic alignments. BMC Bioinformatics 8: 33. PDF


Babak T, Blencowe BJ, Hughes TR (2005) A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription. BMC Genomics 6: 104. PDF


Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR (2004) Probing microRNAs with microarrays: tissue specificity and functional inference. RNA 10: 1813-1819. PDF